StrokeSeg2

Warning

This application is for research purposes only!

Contents:

• User Guide
  • Introduction
  • Graphical Interface
  • Command Line Interface

Download

• StrokeSeg2 installer (Windows, macOS, Linux)

• StrokeSeg2 source code

Model Checkpoints are available here : Zenodo

Software description at [1].

Model description at [2].

Developments

Building workflow

Documentation

• C++ API Documentation (Doxygen)

References

[1]

Youwan Mahé, Axel Plessis, Stéphanie Leplaideur, Elise Bannier, Florent Leray, and Francesca Galassi. StrokeSeg2: Stroke Lesion Segmentation in Clinical Research Workflows. October 2026. URL: https://hal.science/hal-05700258.

[2]

Alessandro Di Matteo, Youwan Mahé, Stéphanie Leplaideur, Isabelle Bonan, Elise Bannier, and Francesca Galassi. Deep learning and multi-modal mri for the segmentation of sub-acute and chronic stroke lesions. Pattern Recognition Letters, 199:225–231, 2026. URL: https://www.sciencedirect.com/science/article/pii/S0167865525003745, doi:https://doi.org/10.1016/j.patrec.2025.11.017.